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PREDICTION OF ANTIGENIC PEPTIDES OF LTX5 TOXIN FROM LASIODORA SP. IBSP8539
Authors: Gomase V.S., Shankar S., Gangawane A.K., Sherkhane A.S.
Number of views: 367
The toxin LTx5 toxin is an 116aa residue peptide is isolated from the venom of Lasiodora sp.
IBSP8539.In this assay we have predicted the binding affinity of toxin LTx5 toxin having 116 amino acids, which
shows 109 nonamers. Peptide fragments of the neurotoxin can be used to select nonamers for use in rational
vaccine design and to increase the understanding of roles of the immune system in neurotoxin studies. Small
segment ‘3- STFIIMISLAVALATWPSEH-22’ of toxin protein called the antigenic epitopes is sufficient for eliciting
the desired immune response. Immunization cassettes should be capable of immunizing of broad immunity
against both humoral and cellular epitope thus giving vaccines the maximum ability to deal with neurotoxin
protein of Eurypelma californicum. Binding ability prediction of antigen peptides to MHC class molecules is
important in vaccine development, We also found the SVM based MHCII-IAb peptide regions, 40- YALADRAEK,
10- ISLAVALAT, 99- MYQAERALE, 14- VALATWPSE, (optimal score is 1.494); MHCII-IAd peptide regions, 96-
LDIMYQAER, 29- SETKLNVEL, 68- GASVLCEAV, 4- STFIIMISL, (optimal score is 0.604); MHCII-IAg7 peptide
regions , 38- GPYALADRA, 98- IMYQAERAL, 9- MISLAVALA, 99- MYQAERALE, (optimal score is 1.904); and
MHCII- RT1.B peptide regions, 17- ATWPSEHIE, 101- QAERALEKL, 98- IMYQAERAL, 108- KLASSFRCE,
(optimal score is 0.601) which represented predicted binders from neurotoxin protein. We have predicted a
successful immunization.