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Identification of stable internal control genes for accurate normalization of real-time quantitative PCR data in testicular tissue from two breeds of cattle
Authors: Pradeep Nag, Ankur Sharma, Elango Kamaraj, Arumugam Kumaresan, Tirtha Kumar Datta, Ayyasamy Manimaran, Nilendu Paul, Sakthivel Jeyakumar, Kerekoppa P. Ramesha
Number of views: 239
Objective: To assess the stability of 10 candidate internal control
genes (ICGs), namely GAPDH, ACTB, RPL23, RPS15A, ATPSF1,
GLUT5, HMBS, ATP2B4, PPIA, and BRP to normalize the
transcriptional data from testes samples of Zebu and crossbred bulls.
Methods: Total RNA was isolated from testicular tissue of Zebu
and crossbred bulls (n=6 each) between 2-8 years of age. cDNA
was synthesized, and the quantitative real-time polymerase chain
reaction (PCR) was performed. The cycle threshold values were
used for the analysis of the stability of ICGs. Four different
statistical algorithms: geNorm, Normfinder, BestKeeper, and
RefFinder, were used to assess the stability of these genes.
Results: ATPSF1, HMBS, PPIA, and RPS15A were the most reliable
and stable ICGs for Zebu testes, and ATPSF1, RPL23, and PPIA for
crossbred testes.
Conclusions: A panel of stable ICGs (ATPSF1, HMBS, PPIA,
RPS15A for Zebu and ATPSF1, RPL23, and PPIA for crossbred)
for normalization of gene expression data in testes samples can be
helpful for researchers to conduct functional genomics studies at the
testicular level in cattle bulls.